Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908240.1_cds_XP_016458359.1_51995
CDS Infomation

[gene=LOC107782037] [db_xref=GeneID:107782037] [protein=scarecrow-like transcription factor PAT1] [protein_id=XP_016458359.1] [location=complement(14415..15923)] [gbkey=CDS]
Sequence

ATGCAAGCATCACAACGACTCAGAAGATCACCCATGTCTAATACTCTTTACTATCAACCA
GTGCAGAAGGCAGAGGCTTGCTGTCTCCCTCAGTTTCAAACTTTAGACAACCATTTGAGC
TACATTAATGGTAGCCATGGATTTTATCACTCACCGTCAACTGCTAGTTTCTCATCAAAC
GGAAGCTCCATTTGCCATCAAGAATCTCAGCCATACCTATCAGATGTTCGCCAATCCTCT
GAGACGACTAACTATGGCTCCCCCACTAGCGGATCTTGCATTACAGATGGTGCAAATGAT
TTCATGCACAAGCTAAAGGAATTGGAAACCGTAATGCTGGGACCTGATTCAGACTTTCTG
GAGAGTTATGATAATTCCTTGCCGAACAGTGTAGCCTCCACAGAAATTAATAGCTGGAGG
CAAATGATGGAGGCCATGCCTAGACGGGATTTGAAACATGTCCTTATCGCTTGTGCAAAA
GCAGTGTCTGACGGTGATTTACTAACAGCACAAGTGTTGATATCTGAGTTGCGTCAAATG
GTATCAGTGTCGGGGGAACCGATTCAGAGATTGGGAGCATACATCTTGGAAGGTCTTGTT
GCGAGGTTGGCCGCATCAGGAAGTTCCATATGCAAATCCTTGAGATGCAAAGAACCCGCA
AGTTTTGAACTGTTGTCTTATATGCACATGCTGTATGAGATTTGCCCTTACTTCAAATTC
GGATACATGTCAGCTAATGGCGCCATTGCAGAAGCAATGAAGGATGAAAATAGAGTTCAT
ATCATTGATTTCCAGATCGCTCAAGGGAGCCAGTGGGTGACTCTAATCCAAGCTTTTGCA
GCTCGGCCTGGTGGACCCCCACATATACGTGTAACAGGCATCGACGATTCCACCTCAGCT
TACGCTCGTGGAGGAGGGCTTAATATTGTGGGGCAGAGGCTGTCTAAACTCGCTAAGGCT
TTCAAGGTGCCTTTCGAGTTTCATGCTGCTGCCATTTCTGGTTCTGATGTTCAAGTTGAA
AACCTTGGAATTCAACCTGGCGAAGCACTGGCTGTAAATTTTGCTTTTACGTTACATCAC
ATCCCAGATGAAAGTGTGAGCACTGAAAATCACCGGGATGGACTATTACGGATGGTCAAA
AACCTGAACCCCAAGGTGGTTACGCTTGTTGAGCAAGAATCTAATACAAACACAGCTGCA
TTCTTCCCTCGGTTCCTTGAAACCTTGGATTATTATACAGCCATGTTCGAGTCAATCGAT
ATGACTCTACCAAGGGGACACAAGGAGCGCATCAACGTTGAGCAGCATTGTTTAGCGAGG
GACGTTGTTAACATTATAGCGTGTGAGGGAATTGAAAGGGTAGAGCGACATGAACTTCTT
GGTAAGTGGAAGTCGCGGTTTAGAATGGCTGGTTTTAGCCCATATCCATTGAGTTCATTA
GTGAATGCTACAATAAAGAGATTGCTAGAAAGCTACTCTGATAAGNAATACTCTTCTTCC
TCTATGTAA

Peptide Sequence

PEP ID

XP_016458359.1
PEP Infomation

PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana tabacum]
Sequence

MQASQRLRRSPMSNTLYYQPVQKAEACCLPQFQTLDNHLSYINGSHGFYHSPSTASFSSN
GSSICHQESQPYLSDVRQSSETTNYGSPTSGSCITDGANDFMHKLKELETVMLGPDSDFL
ESYDNSLPNSVASTEINSWRQMMEAMPRRDLKHVLIACAKAVSDGDLLTAQVLISELRQM
VSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPASFELLSYMHMLYEICPYFKF
GYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSA
YARGGGLNIVGQRLSKLAKAFKVPFEFHAAAISGSDVQVENLGIQPGEALAVNFAFTLHH
IPDESVSTENHRDGLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESID
MTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSL
VNATIKRLLESYSDKXYSSSSM

Transcript Sequence

Gene sequence data has not been registered.